Publications

2018 MICROBIOME RESEARCH PUBLICATIONS BY MRI INVESTIGATORS
 

Cram JA, Hager KW, Kublin JG. Utilizing gnotobiotic models to inform the role of the microbiome in vaccine response heterogeneity. Curr Opin HIV AIDS. 2018 Jan;13(1):1-8. doi: 10.1097/COH.0000000000000422. PMID: 29176431.

Citronberg JS, Wilkens LR, Le Marchand L, Lim U, Monroe KR, Hullar MAJ, White E, Newcomb PA, Lampe JW. Plasma lipopolysaccharide-binding protein and colorectal cancer risk: a nested case-control study in the Multiethnic Cohort. Cancer Causes Control. 2018 Jan;29(1):115-123. doi: 10.1007/s10552-017-0990-z. PMID: 29189972.

Hill JA, Li D, Hay KA, Green ML, Cherian S, Chen X, Riddell SR, Maloney DG, Boeckh M, Turtle CJ. Infectious complications of CD19-targeted chimeric antigen receptor-modified T-cell immunotherapy. Blood. 2018
Jan 4;131(1):121-130. doi: 10.1182/blood-2017-07-793760. PMID: 29038338.

Bhattacharyya A, Hanafi LA, Sheih A, Golob JL, Srinivasan S, Boeckh MJ, Pergam SA, Mahmood S, Baker KK, Gooley TA, Milano F, Fredricks DN, Riddell SR, Turtle CJ. Graft-derived reconstitution of mucosal-associated invariant T cells after allogeneic hematopoietic cell transplantation. Biol Blood Marrow Transplant. 2018 Feb;24(2):242-251. doi: 10.1016/j.bbmt.2017.10.003. PMID: 29024803.

Lannon SMR, Adams Waldorf KM, Fiedler T, Kapur RP, Agnew K, Rajagopal L, Gravett MG, Fredricks DN. Parallel detection of lactobacillus and bacterial vaginosis-associated bacterial DNA in the chorioamnion and vagina of pregnant women at term. J Matern Fetal Neonatal Med. 2018 Mar 12:1-9. doi: 10.1080/14767058.2018.1446208. PMID: 29478370.

Randolph TW, Zhao S, Copeland W, Hullar M, Shojaie A. Kernel-penalized regression for analysis of microbiome data. Ann Appl Stat. 2018 Mar;12(1):540-566. doi: 10.1214/17-AOAS1102. PMID: 30224943.

Tromas N, Taranu ZE, Martin BD, Willis A, Fortin N, Greer CW, Shapiro BJ. Niche separation increases with genetic distance among bloom-forming cyanobacteria. Front Microbiol. 2018 Mar 27;9:438.
doi: 10.3389/fmicb.2018.00438. PMID: 29636727.

Hülsdünker J, Ottmüller KJ, Neeff HP, Koyama M, Gao Z, Thomas OS, Follo M, Al-Ahmad A, Prinz G, Duquesne S, Dierbach H, Kirschnek S, Lämmermann T, Blaser MJ, Fife BT, Blazar BR, Beilhack A, Hill GR, Häcker G, Zeiser R. Neutrophils provide cellular communication between ileum and mesenteric lymph nodes at graft-versus-host disease onset. Blood. 2018 Apr 19;131(16):1858-1869. doi: 10.1182/blood-2017-10-812891. PMID: 29463561.

Varelias A, Bunting MD, Ormerod KL, Koyama M, Olver SD, Straube J, Kuns RD, Robb RJ, Henden AS, Cooper L, Lachner N, Gartlan KH, Lantz O, Kjer-Nielsen L, Mak JY, Fairlie DP, Clouston AD, McCluskey J, Rossjohn J, Lane SW, Hugenholtz P, Hill GR. Recipient mucosal-associated invariant T cells control GVHD within the colon.
J Clin Invest. 2018 May 1;128(5):1919-1936. doi: 10.1172/JCI91646. PMID: 29629900.

Mitchell CM, Srinivasan S, Plantinga A, Wu MC, Reed SD, Guthrie KA, LaCroix AZ, Fiedler T, Munch M, Liu C, Hoffman NG, Blair IA, Newton K, Freeman EW, Joffe H, Cohen L, Fredricks DN. Associations between improvement in genitourinary symptoms of menopause and changes in the vaginal ecosystem. Menopause. 2018 May;25(5):500-507. doi: 10.1097/GME.0000000000001037. PMID: 29206774.

McClelland RS, Lingappa JR, Srinivasan S, Kinuthia J, John-Stewart GC, Jaoko W, Richardson BA, Yuhas K, Fiedler TL, Mandaliya KN, Munch MM, Mugo NR, Cohen CR, Baeten JM, Celum C, Overbaugh J, Fredricks DN. Evaluation of the association between the concentrations of key vaginal bacteria and the increased risk of HIV acquisition in African women from five cohorts: a nested case-control study. Lancet Infect Dis. 2018 May;18(5):554-564. doi: 10.1016/S1473-3099(18)30058-6. PMID: 29396006.

Hullar MAJ, Lampe JW, Torok-Storb BJ, Harkey MA. The canine gut microbiome is associated with higher risk of gastric dilatation-volvulus and high risk genetic variants of the immune system. PLoS One. 2018
Jun 11;13(6):e0197686. doi: 10.1371/journal.pone.0197686. PMID: 29889838.

Stohs EJ, MacAllister T, Pergam SA, Krantz EM, Jain R, Sweet A, Liu C. Unintended consequences of pretransplant vancomycin-resistant Enterococcus screening on antimicrobial stewardship among allogeneic hematopoietic cell transplant recipients. Infect Control Hosp Epidemiol. 2018 Jun;39(6):730-733.
doi: 10.1017/ice.2018.43. PMID: 29589825.

Ginos BNR, Navarro SL, Schwarz Y, Gu H, Wang D, Randolph TW, Shojaie A, Hullar MAJ, Lampe PD, Kratz M, Neuhouser ML, Raftery D, Lampe JW. Circulating bile acids in healthy adults respond differently to a dietary pattern characterized by whole grains, legumes and fruits and vegetables compared to a diet high in refined grains and added sugars: A randomized, controlled, crossover feeding study. Metabolism. 2018 Jun;83:197-204. doi: 10.1016/j.metabol.2018.02.006. PMID: 29458053.

Citronberg JS, Curtis KR, White E, Newcomb PA, Newton K, Atkinson C, Song X, Lampe JW, Hullar MA. Association of gut microbial communities with plasma lipopolysaccharide-binding protein (LBP) in premenopausal women. ISME J. 2018 Jun;12(7):1631-1641. doi: 10.1038/s41396-018-0064-6. PMID: 29434315.

MacAllister TJ, Stohs E, Liu C, Bryan A, Whimbey E, Phipps A, Pergam SA. 10-year trends in vancomycin-resistant enterococci among allogeneic hematopoietic cell transplant recipients. J Infect. 2018 Jul;77(1):38-46. doi: 10.1016/j.jinf.2018.02.014. PMID: 29746941.

Taneva E, Sinclair S, Mesquita PMM, Weinrick, B, Cameron SA, Cheshenko N, Reagle K, Frank B, Srinivasan S, Fredricks DN, Keller MJ, Herold BC. Vaginal microbiome modulates topical antiretroviral drug pharmacokinetics. JCI Insight. 2018 Jul 12;3(13). pii: 99545. doi: 10.1172/jci.insight.99545. PMID: 29997295.

Zhao N, Zhan X, Guthrie KA, Mitchell CM, Larson J. Generalized Hotelling's test for paired compositional data with application to human microbiome studies. Genet Epidemiol. 2018 Jul;42(5):459-469.
doi: 10.1002/gepi.22127. PMID: 29737047.

Catchpoole EM, Thirunavukarasu CE, Varelias A, Schlebusch S, Olver S, Zomerdijk N, Osland E, Kennedy GA, Tey SK, Hill GR, Markey KA. Early blood stream infections after BMT are associated with cytokine dysregulation and poor overall survival. Biol Blood Marrow Transplant. 2018 Jul;24(7):1360-1366. doi: 10.1016/j.bbmt.2018.02.025. PMID: 29518552.

Talarico S, Leverich CK, Wei B, Ma J, Cao X, Guo Y, Han G, Yao L, Self S, Zhao Y, Salama NR. Increased H. pylori stool shedding and EPIYA-D cagA alleles are associated with gastric cancer in an East Asian hospital. PLoS One. 2018 Sep 12;13(9):e0202925. doi: 10.1371/journal.pone.0202925. PMID: 30208068.

Zhan X, Xue L, Zheng H, Plantinga A, Wu MC, Schaid DJ, Zhao N, Chen J. A small-sample kernel association test for correlated data with application to microbiome association studies. Genet Epidemiol. 2018 Dec; 42(8):772-782. doi: 10.1002/gepi.22160. PMID: 30218543.

Fu BC, Randolph TW, Lim U, Monroe KR, Cheng I, Wilkens LR, Le Marchand L, Lampe JW, Hullar MAJ. Temporal variability and stability of the fecal microbiome: The Multiethnic Cohort Study. Cancer Epidemiol Biomarkers Prev. 2019 Jan; 28(1):154-162. doi: 10.1158/1055-9965.EPI-18-0348. PMID: 30206059.

Chambers LC, Srinivasan S, Lukehart SA, Ocbamichael N, Morgan JL, Lowens MS, Fredricks DN, Golden MR, Manhart LE. Primary syphilis in the male urethra - a case report. Clin Infect Dis. 2018 Sep 10. doi: 10.1093/cid/ciy771. PMID: 30202933.

Ogimi C, Xie H, Leisenring WM, Kuypers JM, Jerome KR, Campbell AP, Englund JA, Boeckh M, Waghmare A. Initial high viral load is associated with prolonged shedding of human rhinovirus in allogeneic hematopoietic cell transplant recipients. Biol Blood Marrow Transplant. 2018 Oct;24(10):2160-2163. doi: 10.1016/j.bbmt.2018.07.006. PMID: 30009982.

Zhao N, Zhang H, Clark JJ, Maity A, Wu MC. Composite kernel machine regression based on likelihood ratio
test for joint testing of genetic and gene-environment interaction effect. Biometrics. 2018 Nov 14.
doi: 10.1111/biom.13003. PMID: 30430548.

Ogimi C, Krantz EM, Golob JL, Waghmare A, Liu C, Leisenring WM, Woodard CR, Marquis S, Kuypers JM, Jerome KR, Pergam SA, Fredricks DN, Sorror ML, Englund JA, Boeckh M. Antibiotic exposure prior to respiratory viral infection is associated with progression to lower respiratory tract disease in allogeneic hematopoietic cell transplant recipients. Biol Blood Marrow Transplant. 2018 Nov;24(11):2293-2301. doi: 10.1016/j.bbmt.2018.05.016. PMID: 29777867.

Klurfeld DM, Davis CD, Karp RW, Allen-Vercoe E, Chang EB, Chassaing B, Fahey GC Jr, Hamaker BR, Holscher HD, Lampe JW, Marette A, Martens E, O'Keefe SJ, Rose DJ, Saarela M, Schneeman BO, Slavin JL, Sonnenburg JL, Swanson KS, Wu GD, Lynch CJ. Considerations for best practices in studies of fiber or other dietary components and the intestinal microbiome. Am J Physiol Endocrinol Metab. 2018 Dec 1;315(6):E1087-E1097. doi: 10.1152/ajpendo.00058.2018. PMID: 30130151.

Waghmare A, Xie H, Kuypers J, Sorror ML, Jerome KR, Englund JA, Boeckh M, Leisenring WM. Human rhinovirus infections in hematopoietic cell transplant recipients: risk score for progression to lower respiratory tract infection. Biol Blood Marrow Transplant. 2018 Dec 8. pii: S1083-8791(18)30804-8.
doi: 10.1016/j.bbmt.2018.12.005. PMID: 30537551.

Zhan X, Xue L, Zheng H, Plantinga A, Wu MC, Schaid DJ, Zhao N, Chen J. A small-sample kernel association test for correlated data with application to microbiome association studies. Genet Epidemiol. 2018 Dec;42(8):772-782. doi: 10.1002/gepi.22160. PMID: 30218543.